Chanarat lab

Laboratory of Molecular Medical Mycology, Department of Biochemistry, Faculty of Science, Mahidol University

Ubiquitin Relatives and Gene Expression Control


Pre-mRNA splicing is a crucial process in eukaryotic gene expression, and dysregulation can lead to the production of abnormal proteins and cellular dysfunction, contributing to diseases like cancer, autism spectrum disorders, and ß-thalassemia. Tight regulation of splicing fidelity is essential to prevent these outcomes, with DEAD-box RNA helicases playing a key role in promoting splicing efficiency and accuracy. Specifically, the evolutionarily conserved helicase Prp5 acts as a scaffold during spliceosome assembly and helps control fidelity through its catalytic activity. Our research has revealed that the ubiquitin-like protein Hub1 binds to Prp5, enhancing its ATPase activity and promoting splicing efficiency while also allowing for some missplicing under stress conditions. By investigating the regulation of Prp5 and Hub1, we aim to deepen our understanding of their roles in splicing fidelity control, potentially uncovering targets for treating missplicing-related diseases.


Publications


Insights into the mechanism of pre-mRNA splicing of tiny introns from the genome of a giant ciliate Stentor coeruleus


Nuadthaisong J., Phetruen T., Techawisutthinan C., S. Chanarat

International journal of molecular sciences, 2022


Emerging Roles of Ubiquitin-like Proteins in Pre-mRNA Splicing.


S. Chanarat, S. Mishra

Trends in biochemical sciences, 2018


Error-Prone Splicing Controlled by the Ubiquitin Relative Hub1.


Ramazan Karaduman, S. Chanarat, B. Pfander, S. Jentsch

Molecular cell, 2017


Splicing and beyond: the many faces of the Prp19 complex.


S. Chanarat, K. Sträßer

Biochimica et biophysica acta, 2013


Prp19C and TREX: Interacting to promote transcription elongation 
and mRNA export


S. Chanarat, C. Burkert-Kautzsch, D. Meinel, K. Sträßer

Transcription, 2012


The Transcription Elongation Factor Bur1-Bur2 Interacts with Replication Protein A and Maintains Genome Stability during Replication Stress*


Emanuel Clausing, A. Mayer, S. Chanarat, B. Müller, S. M. Germann, P. Cramer, M. Lisby, K. Sträßer

The Journal of Biological Chemistry, 2010


Hepatitis delta antigen binds to the clamp of RNA polymerase II and affects transcriptional fidelity


Y. Yamaguchi, Takashi Mura, S. Chanarat, Sachiko Okamoto, H. Handa

Genes to cells : devoted to molecular & cellular mechanisms, 2007


Human Transcription Elongation Factor NELF: Identification of Novel Subunits and Reconstitution of the Functionally Active Complex


T. Narita, Y. Yamaguchi, K. Yano, S. Sugimoto, S. Chanarat, T. Wada, Dong-ki Kim, J. Hasegawa, Masashi Omori, N. Inukai, M. Endoh, Tomoko Yamada, H. Handa

Molecular and Cellular Biology, 2003


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